課程資訊
課程名稱
維管束植物形態與演化
Morphology and Evolotion of Vascular Plants 
開課學期
104-1 
授課對象
生命科學院  生命科學系  
授課教師
邱少婷 
課號
EEB5019 
課程識別碼
B44 U1250 
班次
 
學分
全/半年
半年 
必/選修
選修 
上課時間
星期五5,6,7(12:20~15:10) 
上課地點
生科1148 
備註
與王俊能、胡哲明合開
總人數上限:15人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/1041EEB5019_ 
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課程概述

教授陸域植物生態演化、維管束植物形態介紹、構造與弁遄B演化議題及當今研究之動向與發展 

課程目標
使學生瞭解陸域生態演化與維管束植物演化親緣關係,以建立植物演化概念,生物與環境及生物與生物間互動關係,並能夠在植物學的各個領域多方向的思考 
課程要求
1. 積極與老師討論專題報告的主題與呈現
2. 認真撰寫報告及參與評論
3. 上課時間:擬選週末時間隔週補課或校外教學,於第一週討論確定。 
預期每週課後學習時數
 
Office Hours
另約時間 備註: 每週一 08:10~11:00 每週日 14:00~17:00 隔週日下午補上課;請參見課程行事曆。週一上課,課後 星期一 11:00-12: 00即為Office hours;也可另約時間。 或0919660642另約時間 
指定閱讀
van Geel, B. et al. (2008) The ecological implications of a Yakutian mammoth's last meal. Quaternary Research 69:361-367.

Banks, J. A. et al. (2009). Selaginella and 400 Million Years of Separation. Annu. Rev. Plant Biol. 60:223-238.

Pryar K. M. et al. (2004)Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences. American Journal of Botany 91(10): 1582–1598.
Wolf, P.G. et al. (2004) High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris. Gene 339:89-97.

Pittermann J, Sperry JS, Hacke UG, Wheeler JK, Sikkema E. (2005) Torus-margo pits help conifers compete with angiosperms. Science 310: 1924.
Sperry JS. (2003) Evolution of water transport and xylem structure. International Journal of Plant Science 164: S115-S127 Suppl.
McCulloh KA, Sperry JS, Adler FR. (2003) Water transport in plants obeys Murray's law. Nature 421: 939-942.
Taneda H, Sperry JS. (2008) A case-study of water transport in co-occurring ring- versus diffuse-porous trees: contrasts in water-status, conducting capacity, cavitation and vessel refilling. Tree Physiology 28: 1641-1651.

William E. Friedman and Sandra K. Floyd (2001)The Origin of Flowering Plants and Their Reproductive Biology- A Tale of Two Phylogenies. Evolution 55(2): 217-231.
Stuessy Tod F. (2004) A Transitional-Combinational Theory for the Origin of Angiosperms. TAXON 53 (1): 3-16
Hajibabaei, Mehrdad, Junnan Xia, Guy Drouin (2006) Seed plant phylogeny: Gnetophytes are derived conifers and a sister group to Pinaceae Molecular Phylogenetics and Evolution 40: 208–217
Won H, Renner SS 2003 Horizontal gene transfer from flowering plants to Gnetum. PNAS 100(19) : 10824-10829.
Wu, Chung-Shien, Yu-Ting Lai, Ching-Ping Lin, Ya-Nan Wang and Shu-Miaw Chaw. (2009) Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy. Molecular Phylogenetics and Evolution 52(1):115-124

Adams, K.L. et al. (2004) Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics 168:2217-2226.

Mathiasen R. L. et al. (2008) Mistletoes: pathology, systematics, ecology, and management. Plant disease 92:988-1006.

Liu, Z.Y. et al. (2004) A primitive Y chromosome in papaya marks incipient sex chromosome evolution. Nature 427:348-352.

Hanten, J.J. and S.K. Pierce (2001) Synthesis of several light-harvesting complex I polypeptides is blocked by cycloheximide in symbiotic chloroplasts in the sea slug, Elysia chlorotica (Gould): A case for horizontal gene transfer between alga and animal? Biological Bulletin 201:34-44.

Cocucci, A. E. (2005) Morphogenetic seed types of Spermatophyta. Plant Syst. Evol. 250: 1–6
 
參考書目
1. Morphology and evolution of vascular plants, Ernest M. Gifford and Adriance S. Foster, 1988, W. H. Freeman and Company.
2. The evolution of plants, K. J. Willis and J. C. McElwain, 2002, Oxford University Press.
3. Developmental genetics and plant evolution, Quentin C. B. Cronk, Richard M. Bateman and Julie A. Hawkins, 2002, Taylor & Francis Inc.
4. 文獻導讀(Assigned readings): NATURE 428: 553-557 (1 APRIL 2004), American Journal of Botany 91(10): 1582–1598. 2004, Int. J. Plant Sci. 164(3 Suppl.):S115–S127(2003), Annu. Rev. Plant Biol.53:183–202 (2002), Oecologia 133: 534–540 (2002)…….等配合上課內容傳授。
 
評量方式
(僅供參考)
 
No.
項目
百分比
說明
1. 
final exam 
40% 
期末考:問答申論 
2. 
homework (essay) and quiz 
20% 
平時作業:文獻重點報告及評論 
3. 
oral presentation and discussion 
20% 
口頭報告及討論 
4. 
midterm report and discussion  
20% 
專題報告及討論 
 
課程進度
週次
日期
單元主題
第1週
9/18  **注意上課時間調整及調動!!
(STC)IntroductionThe evolution of plant form
The salient features of vascular plants
Phylogenetic analyses and morphological innovations in land plants

The Evolution of Plant Form: Ch 1. 
第2週
9/25  (STC) The vegetative sporophyte, Sporangia, Gametangia, Embryogeny

Morphology and evolution of vascular plants: Ch 1-7.

(STC)Origin of land plants 
第4週
10/09  國定假日 
第8週
11/06  (STC) Coniferophyta
Gnetales: Gnetophyta & the evolution of double fertilization
Discussion paper: Pittermann J, Sperry JS, Hacke UG, Wheeler JK, Sikkema E. (2005) Torus-margo pits help conifers compete with angiosperms. Science 310: 1924.
Sperry JS. (2003) Evolution of water transport and xylem structure. International Journal of Plant Science 164: S115-S127 Suppl.  
William E. Friedman and Sandra K. Floyd (2001)The Origin of Flowering Plants and Their Reproductive Biology- A Tale of Two Phylogenies. Evolution 55(2): 217-231.
Hajibabaei, Mehrdad, Junnan Xia, Guy Drouin (2006) Seed plant phylogeny: Gnetophytes are derived conifers and a sister group to Pinaceae Molecular Phylogenetics and Evolution 40: 208–217
Wu, Chung-Shien, Yu-Ting Lai, Ching-Ping Lin, Ya-Nan Wang and Shu-Miaw Chaw. (2009) Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy. Molecular Phylogenetics and Evolution 52(1):115-124 
第9週
11/13  (JMH)
Origin and early diversification of angiosperms

The Evolution of Plant Form: Ch 6. 
第12週
12/04  (JMH)
The evolution of androecia and gynoecia in angiosperms
 
第13週
12/11  (STC)Coevolution between plants and other organisms (Pollination, dispersal, vines, heterotrophic plants)
Green plants: Ch 9
Discussion paper Mathiasen R. L. et al. (2008) Mistletoes: pathology, systematics, ecology, and management. Plant disease 92:988-1006;
Hanten, J.J. and S.K. Pierce (2001) Synthesis of several light-harvesting complex I polypeptides is blocked by cycloheximide in symbiotic chloroplasts in the sea slug, Elysia chlorotica (Gould): A case for horizontal gene transfer between alga and animal? Biological Bulletin 201:34-44.
 
第14週
12/18  (CNW)Development and the evolution of plant forms:
Evolutionary trends in flowering plants

The Evolution of Plant Form: Ch 9. 
第15週
12/25  (CNW)Development in the wild: phenotypic plasticity:
leaf modification and adaptation

The Evolution of Plant Form: Ch 10. 
第16週
1/1  國定假日 
第17週
1/08  (STC)Research in phylogenetic and functional traits / Using functional morphology to examine the ecology and evolution of specialization or adaption
The evolution of plant form: a summary perspective
The Evolution of Plant Form: Ch 11. 
第18週
1/15  Final Exam (120mins) _____
Seminar 
第3-1週
10/02  (STC)Origin of land plants
The Evolution of Plant Form: Ch 3.

Discussion paper Discussion paper Gensel, P. G. (2008). "The Earliest Land Plants." Annual Review of Ecology, Evolution, and Systematics 39(1): 459-477.
Carlquist, S. and E. L. Schneider (2002) The tracheid-vessel element transition in angiosperms involves multiple independent features: cladistic consequences. American Journal of Botany 89(2): 185–195. 2002.
 
第5-1週
10/16  (STC) Early vascular plants
Lycophyta, Sphenophyta, and Psilophyta
Discussion paper Banks, J. A. et al. (2009). Selaginella and 400 Million Years of Separation. Annu. Rev. Plant Biol. 60:223-238. 
第5-2週
10/16  (STC)Ferns and fern allies
Filicophyta: early ferns, eusporangiate ferns

Plant Pompeii
Discussion paper: Wang, J., H. W. Pfefferkorn, et al. (2012). "Permian vegetational Pompeii from Inner Mongolia and its implications for landscape paleoecology and paleobiogeography of Cathaysia." Proceedings of the National Academy of Sciences.
 
第6-1週
10/23  (STC) Ferns and fern allies
Filicophyta: leptosporangiate ferns

The Evolution of Plant Form: Ch 4. 
第6-2週
10/23  (STC) Specialism in form and function in Pteridophyte successDiscussion paper: Pryar K. M. et al. (2004)Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences. American Journal of Botany 91(10): 1582–1598.Wolf, P.G. et al. (2004) High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris. Gene 339:89-97. 
第7-1週
  校外教學 (科博館)10/30 9:50-17:00

10 月30 日上午9:50 博物館資訊一樓會客室集合
10:00-12:00 古生物地質蒐藏庫參訪
12:00-13:00 午餐
13:00-14:00 植物蒐藏庫參訪
14:00-15:00 生命科學廳植物演化解說
15:30-植物園解說 
第7-2週
10/30  (STC) Gymnosperms and evolution of seed plants  
第7-3週
10/30  Cycadeoidophyta: cycadeoids; Cycadophyta: cycads
Ginkgophyta: ginkgos

The Evolution of Plant Form: Ch 5. 
第10-1週
11/20  (STC)Genomics adaptation and the evolution of plant form;
C4 and CAM photosynthesis; Flowering time~Phenology

The Evolution of Plant Form: Ch 7. 
第10-2週
11/20  (JMH)
Comparative evolutionary genomics of land plants

The evolution of plant form Ch. 8 
第11-1週
11/27  (SHC) Vegetation history and climatic
change in Holocene (孢粉的古氣候研究)
(STC) Terrestrial ecosystem through time
Discussion paper: van Geel, B. et al. (2008) The ecological implications of a Yakutian mammoth's last meal. Quaternary Research 69:361-367. 
第11-2週
11/27  (STC)Environment changes; evolutionary theories;